Do all living entities, even microorganisms like the single-cell amoeba or virus, have both soul and Supersoul?
Hare Krishna! Thanks for this question. It's clear you're thinking deeply on these topics.
Yes EVERY living entity has a soul and a Supersoul. Actually Paramatma, (Krishna) is within every ATOM, but the jiva soul is within every living entity.
Laxmimoni dasi